Data Sets
Last updated June 10, 2020
Featured Data Sets
UAB COVID19 Clinical Data
All patients tested for COVID-19 are being added to i2b2, along with their clinical data frequently. UAB Blazer ID authentication is required.
2019 Novel Coronavirus COVID-19 (2019-nCoV) Data Repository by Johns Hopkins CSSE
A daily update of location and number of confirmed COVID-19 cases, deaths and recoveries for all affected countries.
U-BRITE Location:
/data/project/ubrite/covid19-public/com/github/CSSEGISandData/COVID-19-master
COVID-CT-Dataset: A CT Scan Dataset about COVID-19
The COVID-CT-Dataset has 349 CT images containing clinical findings of COVID-19 from 216 patients.
U-BRITE Location:
/data/project/ubrite/covid19-public/com/github/UCSD-AI4H/COVID-CT-master
COVID Tracking Project
A daily update of location and number of confirmed COVID-19 deaths, test statuses, and hospitalizations for all 50 US states, the District of Columbia, and 5 other US territories.
Source: https://covidtracking.com/
See Data API at https://covidtracking.com/api
Transcriptional response to SARS-CoV-2 infection
Updated genomic sequence data from COVID-19 samples, with standardized metadata including collection date, location, host, and isolation source.
/data/project/ubrite/covid19-public/gov/nih/nlm/ncbi/ftp/geo/series/GSE147nnn/GSE147507
SARS-CoV-2 GenBank data
NCBI Virus is an integrative, value-added resource designed to support retrieval, display and analysis of a curated collection of virus sequences and large sequence datasets.
Source: NCBI Virus query link
/data/project/ubrite/covid19-public/gov/nih/nlm/ncbi/labs/virus/vssi/sequences.fasta
China National Center for Bioinformation 2019 Novel Coronavirus Resource (2019nCoVR)
2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC.
/data/project/ubrite/covid19-public/cn/ac/big/bigd/ncov/release_genome
CORD-19
Collection of over 45,000 journal articles about COVID-19 and the coronavirus family of viruses, updated weekly. The corpus is updated regularly as new research is published in peer-reviewed publications and archival services like bioRxiv, medRxiv, and others.
/data/project/ubrite/covid19-public/org/semanticscholar/cord19/historical_releases
Coronavirus Disease 2019 (COVID-19) Clinical Data Repository
Repository of clinical characteristics of patients who have taken a COVID-19 test including test results, location, patient age, heart rate, blood pressure, clinical history, oxygen saturation levels, respiratory status and other symptoms.
Source: https://covidclinicaldata.org/
U-BRITE Location:
/data/project/ubrite/covid19-public/com/github/mdcollab/covidclinicaldata-master
COVID-19 South Korea Dataset
Data related to COVID-19 in South Korea including COVID-19 case counts and line list patient data. Dataset components include patient routes as well as patient age, gender and date of diagnosis.
U-BRITE Location:
/data/project/ubrite/covid19-public/com/github/ThisIsIsaac/Data-Science-for-COVID-19-master
COVID-19 Treatment and Vaccine Tracker
This tracker contains an aggregation of publicly-available information from validated sources. The tracker is not an endorsement of one approach or treatment over another, but simply a list of treatments and vaccines currently in development.
/data/project/ubrite/covid19-public/org/milkeninstitute/covid-19-tracker