Last updated June 10, 2020

Featured Data Sets

UAB COVID19 Clinical Data

All patients tested for COVID-19 are being added to i2b2, along with their clinical data frequently. UAB Blazer ID authentication is required. 

2019 Novel Coronavirus COVID-19 (2019-nCoV) Data Repository by Johns Hopkins CSSE

A daily update of location and number of confirmed COVID-19 cases, deaths and recoveries for all affected countries.

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COVID-CT-Dataset: A CT Scan Dataset about COVID-19

The COVID-CT-Dataset has 349 CT images containing clinical findings of COVID-19 from 216 patients. 

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COVID Tracking Project

A daily update of location and number of confirmed COVID-19 deaths, test statuses, and hospitalizations for all 50 US states, the District of Columbia, and 5 other US territories.

Transcriptional response to SARS-CoV-2 infection

Updated genomic sequence data from COVID-19 samples, with standardized metadata including collection date, location, host, and isolation source.

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SARS-CoV-2 GenBank data

NCBI Virus is an integrative, value-added resource designed to support retrieval, display and analysis of a curated collection of virus sequences and large sequence datasets.

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China National Center for Bioinformation 2019 Novel Coronavirus Resource (2019nCoVR)

2019nCoVR features comprehensive integration of genomic and proteomic sequences as well as their metadata information from the GISAID, NCBI, NMDC and CNCB/NGDC. 

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Collection of over 45,000 journal articles about COVID-19 and the coronavirus family of viruses, updated weekly. The corpus is updated regularly as new research is published in peer-reviewed publications and archival services like bioRxiv, medRxiv, and others.

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Coronavirus Disease 2019 (COVID-19) Clinical Data Repository

Repository of clinical characteristics of patients who have taken a COVID-19 test including test results, location, patient age, heart rate, blood pressure, clinical history, oxygen saturation levels, respiratory status and other symptoms.

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COVID-19 South Korea Dataset

Data related to COVID-19 in South Korea including COVID-19 case counts and line list patient data. Dataset components include patient routes as well as patient age, gender and date of diagnosis.

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COVID-19 Treatment and Vaccine Tracker

This tracker contains an aggregation of publicly-available information from validated sources. The tracker is not an endorsement of one approach or treatment over another, but simply a list of treatments and vaccines currently in development.

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Useful COVID-19 Data Sets