Analysis Tools

Last updated May 19, 2020

Featured Tools


Pathway and Annotated-list Gene-signature Electronic Repository for Coronavirus-related disease (PAGER-CoV) is an online systems biology tool for constructing and visualizing gene and PAG networks from multiple PAG genesets.
PAGER-CoV contains domain-expert curated PAGs curated from published high-impact SARS-CoV-2 studies as well as curated PAGs relating to infectious disease. PAGER-CoV was designed specifically for COVID-19 drug repositioning and translational research studies, as well as to help COVID-19 researchers quickly identify relevant information based on a queried geneset. PAGs from PAGER-CoV can be used with GSEA software for parallel analysis.


HelpBeatCOVID19 is a COVID-19 Symptom Tracker developed by the University of Alabama at Birmingham. It is an inclusive system that focuses on health and wellness tracking across the Southeast, with an emphasis on underserved communities and underrepresented populations. As hot spots across the Deep South increase, this system will help provide surveillance in areas that are typically under surveilled. 


COVID Act Now is a multidisciplinary team of technologists, epidemiologists, health experts, and public policy leaders working to model how COVID-19 will spread in the U.S. Access the link above for real-time modeling and metrics for the state of Alabama.

ADPH Data and Surveillance Dashboard

Alabama’s COVID-19 Data and Surveillance Dashboard maintained by the Alabama Department of Public Heath.

Useful COVID-19 Software Tools